Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora.
Identifieur interne : 000793 ( Main/Exploration ); précédent : 000792; suivant : 000794Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora.
Auteurs : Ramesh R. Vetukuri [Suède] ; Sucheta Tripathy [Inde] ; Mathu Malar C [Inde] ; Arijit Panda [Inde] ; Sandeep K. Kushwaha [Suède] ; Aakash Chawade [Suède] ; Erik Andreasson [Suède] ; Laura J. Grenville-Briggs [Suède] ; Stephen C. Whisson [Royaume-Uni]Source :
- Genome biology and evolution [ 1759-6653 ] ; 2018.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Phytophthora.
- parasitologie : Arbres, Fagus, Maladies des plantes.
- pathogénicité : Phytophthora.
- Fréquence d'allèle, Génome, Génomique, Taille du génome, Tétraploïdie.
English descriptors
- KwdEn :
- MESH :
- genetics : Phytophthora.
- parasitology : Fagus, Plant Diseases, Trees.
- pathogenicity : Phytophthora.
- Gene Frequency, Genome, Genome Size, Genomics, Tetraploidy.
Abstract
Species from the genus Phytophthora are well represented among organisms causing serious diseases on trees. Phytophthora plurivora has been implicated in long-term decline of woodland trees across Europe. Here we present a draft genome sequence of P. plurivora, originally isolated from diseased European beech (Fagus sylvatica) in Malmö, Sweden. When compared with other sequenced Phytophthora species, the P. plurivora genome assembly is relatively compact, spanning 41 Mb. This is organized in 1,919 contigs and 1,898 scaffolds, encompassing 11,741 predicted genes, and has a repeat content of approximately 15%. Comparison of allele frequencies revealed evidence for tetraploidy in the sequenced isolate. As in other sequenced Phytophthora species, P. plurivora possesses genes for pathogenicity-associated RXLR and Crinkle and Necrosis effectors, predominantly located in gene-sparse genomic regions. Comparison of the P. plurivora RXLR effectors with orthologs in other sequenced species in the same clade (Phytophthora multivora and Phytophthora capsici) revealed that the orthologs were likely to be under neutral or purifying selection.
DOI: 10.1093/gbe/evy162
PubMed: 30060094
PubMed Central: PMC6152947
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora.</title><author><name sortKey="Vetukuri, Ramesh R" sort="Vetukuri, Ramesh R" uniqKey="Vetukuri R" first="Ramesh R" last="Vetukuri">Ramesh R. Vetukuri</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation></author><author><name sortKey="Tripathy, Sucheta" sort="Tripathy, Sucheta" uniqKey="Tripathy S" first="Sucheta" last="Tripathy">Sucheta Tripathy</name><affiliation wicri:level="1"><nlm:affiliation>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata</wicri:regionArea><wicri:noRegion>Kolkata</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh</wicri:regionArea><wicri:noRegion>Uttar Pradesh</wicri:noRegion></affiliation></author><author><name sortKey="Malar C, Mathu" sort="Malar C, Mathu" uniqKey="Malar C M" first="Mathu" last="Malar C">Mathu Malar C</name><affiliation wicri:level="1"><nlm:affiliation>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata</wicri:regionArea><wicri:noRegion>Kolkata</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh</wicri:regionArea><wicri:noRegion>Uttar Pradesh</wicri:noRegion></affiliation></author><author><name sortKey="Panda, Arijit" sort="Panda, Arijit" uniqKey="Panda A" first="Arijit" last="Panda">Arijit Panda</name><affiliation wicri:level="1"><nlm:affiliation>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata</wicri:regionArea><wicri:noRegion>Kolkata</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh</wicri:regionArea><wicri:noRegion>Uttar Pradesh</wicri:noRegion></affiliation></author><author><name sortKey="Kushwaha, Sandeep K" sort="Kushwaha, Sandeep K" uniqKey="Kushwaha S" first="Sandeep K" last="Kushwaha">Sandeep K. Kushwaha</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>National Bioinformatics Infrastructure Sweden (NBIS), Department of Biology, Lund University, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>National Bioinformatics Infrastructure Sweden (NBIS), Department of Biology, Lund University</wicri:regionArea><wicri:noRegion>Lund University</wicri:noRegion></affiliation></author><author><name sortKey="Chawade, Aakash" sort="Chawade, Aakash" uniqKey="Chawade A" first="Aakash" last="Chawade">Aakash Chawade</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation></author><author><name sortKey="Andreasson, Erik" sort="Andreasson, Erik" uniqKey="Andreasson E" first="Erik" last="Andreasson">Erik Andreasson</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation></author><author><name sortKey="Grenville Briggs, Laura J" sort="Grenville Briggs, Laura J" uniqKey="Grenville Briggs L" first="Laura J" last="Grenville-Briggs">Laura J. Grenville-Briggs</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation></author><author><name sortKey="Whisson, Stephen C" sort="Whisson, Stephen C" uniqKey="Whisson S" first="Stephen C" last="Whisson">Stephen C. Whisson</name><affiliation wicri:level="1"><nlm:affiliation>Cell and Molecular Sciences, The James Hutton Institute, Dundee, United Kingdom.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Cell and Molecular Sciences, The James Hutton Institute, Dundee</wicri:regionArea><wicri:noRegion>Dundee</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2018">2018</date><idno type="RBID">pubmed:30060094</idno><idno type="pmid">30060094</idno><idno type="doi">10.1093/gbe/evy162</idno><idno type="pmc">PMC6152947</idno><idno type="wicri:Area/Main/Corpus">000706</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000706</idno><idno type="wicri:Area/Main/Curation">000706</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000706</idno><idno type="wicri:Area/Main/Exploration">000706</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora.</title><author><name sortKey="Vetukuri, Ramesh R" sort="Vetukuri, Ramesh R" uniqKey="Vetukuri R" first="Ramesh R" last="Vetukuri">Ramesh R. Vetukuri</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation></author><author><name sortKey="Tripathy, Sucheta" sort="Tripathy, Sucheta" uniqKey="Tripathy S" first="Sucheta" last="Tripathy">Sucheta Tripathy</name><affiliation wicri:level="1"><nlm:affiliation>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata</wicri:regionArea><wicri:noRegion>Kolkata</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh</wicri:regionArea><wicri:noRegion>Uttar Pradesh</wicri:noRegion></affiliation></author><author><name sortKey="Malar C, Mathu" sort="Malar C, Mathu" uniqKey="Malar C M" first="Mathu" last="Malar C">Mathu Malar C</name><affiliation wicri:level="1"><nlm:affiliation>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata</wicri:regionArea><wicri:noRegion>Kolkata</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh</wicri:regionArea><wicri:noRegion>Uttar Pradesh</wicri:noRegion></affiliation></author><author><name sortKey="Panda, Arijit" sort="Panda, Arijit" uniqKey="Panda A" first="Arijit" last="Panda">Arijit Panda</name><affiliation wicri:level="1"><nlm:affiliation>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata</wicri:regionArea><wicri:noRegion>Kolkata</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh</wicri:regionArea><wicri:noRegion>Uttar Pradesh</wicri:noRegion></affiliation></author><author><name sortKey="Kushwaha, Sandeep K" sort="Kushwaha, Sandeep K" uniqKey="Kushwaha S" first="Sandeep K" last="Kushwaha">Sandeep K. Kushwaha</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>National Bioinformatics Infrastructure Sweden (NBIS), Department of Biology, Lund University, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>National Bioinformatics Infrastructure Sweden (NBIS), Department of Biology, Lund University</wicri:regionArea><wicri:noRegion>Lund University</wicri:noRegion></affiliation></author><author><name sortKey="Chawade, Aakash" sort="Chawade, Aakash" uniqKey="Chawade A" first="Aakash" last="Chawade">Aakash Chawade</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation></author><author><name sortKey="Andreasson, Erik" sort="Andreasson, Erik" uniqKey="Andreasson E" first="Erik" last="Andreasson">Erik Andreasson</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation></author><author><name sortKey="Grenville Briggs, Laura J" sort="Grenville Briggs, Laura J" uniqKey="Grenville Briggs L" first="Laura J" last="Grenville-Briggs">Laura J. Grenville-Briggs</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation></author><author><name sortKey="Whisson, Stephen C" sort="Whisson, Stephen C" uniqKey="Whisson S" first="Stephen C" last="Whisson">Stephen C. Whisson</name><affiliation wicri:level="1"><nlm:affiliation>Cell and Molecular Sciences, The James Hutton Institute, Dundee, United Kingdom.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Cell and Molecular Sciences, The James Hutton Institute, Dundee</wicri:regionArea><wicri:noRegion>Dundee</wicri:noRegion></affiliation></author></analytic><series><title level="j">Genome biology and evolution</title><idno type="eISSN">1759-6653</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Fagus (parasitology)</term><term>Gene Frequency (MeSH)</term><term>Genome (MeSH)</term><term>Genome Size (MeSH)</term><term>Genomics (MeSH)</term><term>Phytophthora (genetics)</term><term>Phytophthora (pathogenicity)</term><term>Plant Diseases (parasitology)</term><term>Tetraploidy (MeSH)</term><term>Trees (parasitology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Arbres (parasitologie)</term><term>Fagus (parasitologie)</term><term>Fréquence d'allèle (MeSH)</term><term>Génome (MeSH)</term><term>Génomique (MeSH)</term><term>Maladies des plantes (parasitologie)</term><term>Phytophthora (génétique)</term><term>Phytophthora (pathogénicité)</term><term>Taille du génome (MeSH)</term><term>Tétraploïdie (MeSH)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="parasitologie" xml:lang="fr"><term>Arbres</term><term>Fagus</term><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="parasitology" xml:lang="en"><term>Fagus</term><term>Plant Diseases</term><term>Trees</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Phytophthora</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Frequency</term><term>Genome</term><term>Genome Size</term><term>Genomics</term><term>Tetraploidy</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Fréquence d'allèle</term><term>Génome</term><term>Génomique</term><term>Taille du génome</term><term>Tétraploïdie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Species from the genus Phytophthora are well represented among organisms causing serious diseases on trees. Phytophthora plurivora has been implicated in long-term decline of woodland trees across Europe. Here we present a draft genome sequence of P. plurivora, originally isolated from diseased European beech (Fagus sylvatica) in Malmö, Sweden. When compared with other sequenced Phytophthora species, the P. plurivora genome assembly is relatively compact, spanning 41 Mb. This is organized in 1,919 contigs and 1,898 scaffolds, encompassing 11,741 predicted genes, and has a repeat content of approximately 15%. Comparison of allele frequencies revealed evidence for tetraploidy in the sequenced isolate. As in other sequenced Phytophthora species, P. plurivora possesses genes for pathogenicity-associated RXLR and Crinkle and Necrosis effectors, predominantly located in gene-sparse genomic regions. Comparison of the P. plurivora RXLR effectors with orthologs in other sequenced species in the same clade (Phytophthora multivora and Phytophthora capsici) revealed that the orthologs were likely to be under neutral or purifying selection.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30060094</PMID><DateCompleted><Year>2019</Year><Month>02</Month><Day>04</Day></DateCompleted><DateRevised><Year>2019</Year><Month>02</Month><Day>15</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1759-6653</ISSN><JournalIssue CitedMedium="Internet"><Volume>10</Volume><Issue>9</Issue><PubDate><Year>2018</Year><Month>09</Month><Day>01</Day></PubDate></JournalIssue><Title>Genome biology and evolution</Title><ISOAbbreviation>Genome Biol Evol</ISOAbbreviation></Journal><ArticleTitle>Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora.</ArticleTitle><Pagination><MedlinePgn>2432-2442</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1093/gbe/evy162</ELocationID><Abstract><AbstractText>Species from the genus Phytophthora are well represented among organisms causing serious diseases on trees. Phytophthora plurivora has been implicated in long-term decline of woodland trees across Europe. Here we present a draft genome sequence of P. plurivora, originally isolated from diseased European beech (Fagus sylvatica) in Malmö, Sweden. When compared with other sequenced Phytophthora species, the P. plurivora genome assembly is relatively compact, spanning 41 Mb. This is organized in 1,919 contigs and 1,898 scaffolds, encompassing 11,741 predicted genes, and has a repeat content of approximately 15%. Comparison of allele frequencies revealed evidence for tetraploidy in the sequenced isolate. As in other sequenced Phytophthora species, P. plurivora possesses genes for pathogenicity-associated RXLR and Crinkle and Necrosis effectors, predominantly located in gene-sparse genomic regions. Comparison of the P. plurivora RXLR effectors with orthologs in other sequenced species in the same clade (Phytophthora multivora and Phytophthora capsici) revealed that the orthologs were likely to be under neutral or purifying selection.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Vetukuri</LastName><ForeName>Ramesh R</ForeName><Initials>RR</Initials><AffiliationInfo><Affiliation>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tripathy</LastName><ForeName>Sucheta</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, India.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Malar C</LastName><ForeName>Mathu</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, India.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Panda</LastName><ForeName>Arijit</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Computational Genomics Laboratory, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research, Indian Institute of Chemical Biology, Kolkata, India.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kushwaha</LastName><ForeName>Sandeep K</ForeName><Initials>SK</Initials><AffiliationInfo><Affiliation>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>National Bioinformatics Infrastructure Sweden (NBIS), Department of Biology, Lund University, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chawade</LastName><ForeName>Aakash</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Andreasson</LastName><ForeName>Erik</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Grenville-Briggs</LastName><ForeName>Laura J</ForeName><Initials>LJ</Initials><AffiliationInfo><Affiliation>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Whisson</LastName><ForeName>Stephen C</ForeName><Initials>SC</Initials><AffiliationInfo><Affiliation>Cell and Molecular Sciences, The James Hutton Institute, Dundee, United Kingdom.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>09</Month><Day>01</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Genome Biol Evol</MedlineTA><NlmUniqueID>101509707</NlmUniqueID><ISSNLinking>1759-6653</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D029964" MajorTopicYN="N">Fagus</DescriptorName><QualifierName UI="Q000469" MajorTopicYN="Y">parasitology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005787" MajorTopicYN="N">Gene Frequency</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016678" MajorTopicYN="N">Genome</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D059646" MajorTopicYN="N">Genome Size</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D023281" MajorTopicYN="N">Genomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000469" MajorTopicYN="Y">parasitology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D057891" MajorTopicYN="N">Tetraploidy</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014197" MajorTopicYN="N">Trees</DescriptorName><QualifierName UI="Q000469" MajorTopicYN="Y">parasitology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>07</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>7</Month><Day>31</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>2</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>7</Month><Day>31</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30060094</ArticleId><ArticleId IdType="pii">5061551</ArticleId><ArticleId IdType="doi">10.1093/gbe/evy162</ArticleId><ArticleId IdType="pmc">PMC6152947</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Mol Plant Pathol. 2018 Jan;19(1):227-237</Citation><ArticleIdList><ArticleId IdType="pubmed">27785876</ArticleId></ArticleIdList></Reference><Reference><Citation>Persoonia. 2017 Jun;38:100-135</Citation><ArticleIdList><ArticleId IdType="pubmed">29151629</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Genet Dev. 2015 Dec;35:57-65</Citation><ArticleIdList><ArticleId IdType="pubmed">26451981</ArticleId></ArticleIdList></Reference><Reference><Citation>Sci Rep. 2017 Jul 10;7(1):5007</Citation><ArticleIdList><ArticleId IdType="pubmed">28694506</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2006 Sep 1;313(5791):1261-6</Citation><ArticleIdList><ArticleId IdType="pubmed">16946064</ArticleId></ArticleIdList></Reference><Reference><Citation>Sci Rep. 2017 Apr 18;7:46553</Citation><ArticleIdList><ArticleId IdType="pubmed">28417959</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2009 Sep 17;461(7262):393-8</Citation><ArticleIdList><ArticleId IdType="pubmed">19741609</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2013;8(3):e59517</Citation><ArticleIdList><ArticleId IdType="pubmed">23536880</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2017 Aug 15;33(16):2575-2576</Citation><ArticleIdList><ArticleId IdType="pubmed">28383704</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2013 Sep 03;8(9):e74588</Citation><ArticleIdList><ArticleId IdType="pubmed">24019970</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 2012 Oct;25(10):1350-60</Citation><ArticleIdList><ArticleId IdType="pubmed">22712506</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2015 Oct 1;31(19):3210-2</Citation><ArticleIdList><ArticleId IdType="pubmed">26059717</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2016 Apr;210(2):743-61</Citation><ArticleIdList><ArticleId IdType="pubmed">26680733</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2003 Sep;13(9):2178-89</Citation><ArticleIdList><ArticleId IdType="pubmed">12952885</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2009 Nov;10(6):795-803</Citation><ArticleIdList><ArticleId IdType="pubmed">19849785</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2011 Mar 15;27(6):764-70</Citation><ArticleIdList><ArticleId IdType="pubmed">21217122</ArticleId></ArticleIdList></Reference><Reference><Citation>Genom Data. 2015 Nov 22;7:54-6</Citation><ArticleIdList><ArticleId IdType="pubmed">26981359</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2007 Nov 1;450(7166):115-8</Citation><ArticleIdList><ArticleId IdType="pubmed">17914356</ArticleId></ArticleIdList></Reference><Reference><Citation>Methods Mol Biol. 2014;1127:29-51</Citation><ArticleIdList><ArticleId IdType="pubmed">24643550</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2014 May 1;30(9):1236-40</Citation><ArticleIdList><ArticleId IdType="pubmed">24451626</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2014 Aug 1;30(15):2114-20</Citation><ArticleIdList><ArticleId IdType="pubmed">24695404</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2015 Aug 07;10(8):e0135240</Citation><ArticleIdList><ArticleId IdType="pubmed">26252511</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2007 Aug;24(8):1586-91</Citation><ArticleIdList><ArticleId IdType="pubmed">17483113</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol Evol. 2017 Feb 15;:null</Citation><ArticleIdList><ArticleId IdType="pubmed">28204581</ArticleId></ArticleIdList></Reference><Reference><Citation>PeerJ. 2013 Sep 17;1:e167</Citation><ArticleIdList><ArticleId IdType="pubmed">24109552</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2007 Aug;19(8):2349-69</Citation><ArticleIdList><ArticleId IdType="pubmed">17675403</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2017 Jul 3;45(W1):W36-W41</Citation><ArticleIdList><ArticleId IdType="pubmed">28460038</ArticleId></ArticleIdList></Reference><Reference><Citation>IMA Fungus. 2017 Dec;8(2):355-384</Citation><ArticleIdList><ArticleId IdType="pubmed">29242780</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2015 May;16(4):413-34</Citation><ArticleIdList><ArticleId IdType="pubmed">25178392</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2015 Jul 1;43(W1):W237-43</Citation><ArticleIdList><ArticleId IdType="pubmed">25948579</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2014 Jan;42(Database issue):D490-5</Citation><ArticleIdList><ArticleId IdType="pubmed">24270786</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W309-12</Citation><ArticleIdList><ArticleId IdType="pubmed">15215400</ArticleId></ArticleIdList></Reference><Reference><Citation>Protoplasma. 2018 Jan;255(1):297-357</Citation><ArticleIdList><ArticleId IdType="pubmed">28875267</ArticleId></ArticleIdList></Reference><Reference><Citation>Genom Data. 2017 May 12;12:155-156</Citation><ArticleIdList><ArticleId IdType="pubmed">28560165</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 2015 Oct;28(10):1063-72</Citation><ArticleIdList><ArticleId IdType="pubmed">26125490</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2016 Jul 8;44(W1):W3-W10</Citation><ArticleIdList><ArticleId IdType="pubmed">27137889</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2010 Oct 5;107(40):17421-6</Citation><ArticleIdList><ArticleId IdType="pubmed">20847293</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Lett. 2013 Jul;344(2):179-85</Citation><ArticleIdList><ArticleId IdType="pubmed">23678994</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2013 Dec 26;8(12):e85385</Citation><ArticleIdList><ArticleId IdType="pubmed">24386473</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2015 Jan;43(Database issue):D645-55</Citation><ArticleIdList><ArticleId IdType="pubmed">25414340</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2004;5(2):R12</Citation><ArticleIdList><ArticleId IdType="pubmed">14759262</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2017 Oct;216(1):205-215</Citation><ArticleIdList><ArticleId IdType="pubmed">28758684</ArticleId></ArticleIdList></Reference><Reference><Citation>mSphere. 2017 Nov 22;2(6):null</Citation><ArticleIdList><ArticleId IdType="pubmed">29202039</ArticleId></ArticleIdList></Reference><Reference><Citation>Mycologia. 2009 Nov-Dec;101(6):833-40</Citation><ArticleIdList><ArticleId IdType="pubmed">19927748</ArticleId></ArticleIdList></Reference><Reference><Citation>Persoonia. 2009 Jun;22:1-13</Citation><ArticleIdList><ArticleId IdType="pubmed">20198133</ArticleId></ArticleIdList></Reference><Reference><Citation>Persoonia. 2009 Jun;22:95-110</Citation><ArticleIdList><ArticleId IdType="pubmed">20198142</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2013 Apr 15;29(8):1072-5</Citation><ArticleIdList><ArticleId IdType="pubmed">23422339</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Lett. 2010 Feb;303(1):55-60</Citation><ArticleIdList><ArticleId IdType="pubmed">20002192</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Protoc. 2012 Mar 01;7(3):562-78</Citation><ArticleIdList><ArticleId IdType="pubmed">22383036</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2010 Sep 28;11:525</Citation><ArticleIdList><ArticleId IdType="pubmed">20920201</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 2017 Jan;30(1):45-52</Citation><ArticleIdList><ArticleId IdType="pubmed">27957885</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4874-9</Citation><ArticleIdList><ArticleId IdType="pubmed">18344324</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2017 Feb 23;18(1):198</Citation><ArticleIdList><ArticleId IdType="pubmed">28228125</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Microbiol. 2016 Dec;34:127-135</Citation><ArticleIdList><ArticleId IdType="pubmed">27723513</ArticleId></ArticleIdList></Reference><Reference><Citation>J Comput Biol. 2012 May;19(5):455-77</Citation><ArticleIdList><ArticleId IdType="pubmed">22506599</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2014 Jan 10;9(1):e85368</Citation><ArticleIdList><ArticleId IdType="pubmed">24427303</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Pathog. 2012 Jan;8(1):e1002400</Citation><ArticleIdList><ArticleId IdType="pubmed">22253591</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Inde</li><li>Royaume-Uni</li><li>Suède</li></country></list><tree><country name="Suède"><noRegion><name sortKey="Vetukuri, Ramesh R" sort="Vetukuri, Ramesh R" uniqKey="Vetukuri R" first="Ramesh R" last="Vetukuri">Ramesh R. Vetukuri</name></noRegion><name sortKey="Andreasson, Erik" sort="Andreasson, Erik" uniqKey="Andreasson E" first="Erik" last="Andreasson">Erik Andreasson</name><name sortKey="Chawade, Aakash" sort="Chawade, Aakash" uniqKey="Chawade A" first="Aakash" last="Chawade">Aakash Chawade</name><name sortKey="Grenville Briggs, Laura J" sort="Grenville Briggs, Laura J" uniqKey="Grenville Briggs L" first="Laura J" last="Grenville-Briggs">Laura J. Grenville-Briggs</name><name sortKey="Kushwaha, Sandeep K" sort="Kushwaha, Sandeep K" uniqKey="Kushwaha S" first="Sandeep K" last="Kushwaha">Sandeep K. Kushwaha</name><name sortKey="Kushwaha, Sandeep K" sort="Kushwaha, Sandeep K" uniqKey="Kushwaha S" first="Sandeep K" last="Kushwaha">Sandeep K. Kushwaha</name></country><country name="Inde"><noRegion><name sortKey="Tripathy, Sucheta" sort="Tripathy, Sucheta" uniqKey="Tripathy S" first="Sucheta" last="Tripathy">Sucheta Tripathy</name></noRegion><name sortKey="Malar C, Mathu" sort="Malar C, Mathu" uniqKey="Malar C M" first="Mathu" last="Malar C">Mathu Malar C</name><name sortKey="Malar C, Mathu" sort="Malar C, Mathu" uniqKey="Malar C M" first="Mathu" last="Malar C">Mathu Malar C</name><name sortKey="Panda, Arijit" sort="Panda, Arijit" uniqKey="Panda A" first="Arijit" last="Panda">Arijit Panda</name><name sortKey="Panda, Arijit" sort="Panda, Arijit" uniqKey="Panda A" first="Arijit" last="Panda">Arijit Panda</name><name sortKey="Tripathy, Sucheta" sort="Tripathy, Sucheta" uniqKey="Tripathy S" first="Sucheta" last="Tripathy">Sucheta Tripathy</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Whisson, Stephen C" sort="Whisson, Stephen C" uniqKey="Whisson S" first="Stephen C" last="Whisson">Stephen C. Whisson</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PhytophthoraV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000793 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000793 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PhytophthoraV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:30060094
|texte= Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:30060094" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PhytophthoraV1
| This area was generated with Dilib version V0.6.38. |  |